Command Index — .dotfiles Manual

Generated from dot help all plus the dot help <command> detail registry, so a command that is routable and has help text is listed even when it is absent from the compact overview. To refresh after adding or renaming a subcommand, run tools/docs/generate-command-index.sh. The CI job lint/command-index fails when this file is stale.

Command	Summary
`dot add`	Add a file to chezmoi source
`dot agent`	Profile-aware execution, agent card, a2a-card, session log, checkpoints, and conformance
`dot agent`	a2a-card Show or validate the A2A v0.3 agent card
`dot agent`	card Show the local agent card metadata
`dot agent`	checkpoint Manage agent run checkpoints (save/list/show/replay)
`dot agent`	conformance Run the A2A conformance test suite
`dot agent`	delegate Delegate execution to an allowed sub-agent
`dot agent`	log Tail the agent session audit log
`dot agents`	check Verify AGENTS.md tracks CLAUDE.md (exit 1 if drifted)
`dot agents`	list Show recognised AI agent harnesses and their config paths
`dot agents`	render Regenerate AGENTS.md and per-harness config from CLAUDE.md
`dot agy`	Antigravity CLI with context patterns
`dot ai`	AI fleet cockpit, gateway, and cost
`dot ai`	ask Context-aware RAG query over your dotfiles
`dot ai`	chat Start an interactive AI session with a chosen tool
`dot ai`	cost Report AI spend across every provider from the unified run log
`dot ai`	delegate Delegate a coding task to a cheaper AI model under agent policy
`dot ai`	doctor Diagnose AI tooling configuration and connectivity
`dot ai`	install Install AI CLI tools via mise/native installers
`dot ai`	login Interactive setup/authentication for installed AI CLI tools
`dot ai`	run Run a one-shot prompt with an AI tool
`dot ai`	serve Run the local AI gateway/proxy that routes non-Claude providers
`dot ai`	tools Show installed AI CLI tools and their versions
`dot ai-query`	Context-aware RAG query over your dotfiles
`dot ai-setup`	Interactive setup for all AI CLI tools
`dot aider`	Aider with context patterns
`dot aliases`	cheatsheet Generate the alias cheatsheet markdown
`dot aliases`	list List all shell aliases shipped by the dotfiles
`dot aliases`	search Search aliases by term
`dot aliases`	stats Show alias usage counts from shell history
`dot aliases`	tiers Show which alias tiers/ecosystems are enabled
`dot aliases`	why Show details and deprecation status for a single alias
`dot apply`	Apply the current dotfiles to this machine.
`dot attest`	Export workstation attestation evidence (--json
`dot autohand`	Run the Autohand CLI with dotfiles context patterns.
`dot backup`	Create a compressed backup of your home
`dot benchmark`	Benchmark shell startup with per-component profiling
`dot bundle`	Create offline archive of dotfiles environment
`dot cache-refresh`	Regenerate shell caches for ultra-fast startup
`dot cd`	Print source directory path (use: cd $(dot cd))
`dot chaos`	Simulate config corruption to test self-healing
`dot cl`	Claude CLI with context patterns
`dot claude`	Run the Claude CLI bridge (alias for cl).
`dot codex`	Run the OpenAI Codex CLI with dotfiles context patterns.
`dot commit`	AI-powered conventional commit
`dot completion`	Generate shell completions (bash/zsh/fish/nu) from the command registry
`dot copilot`	GitHub Copilot CLI with context patterns
`dot diff`	Show chezmoi diff with exclusions
`dot dns-doh`	Enable DNS-over-HTTPS [macOS,Linux]
`dot docs`	Show repo README
`dot doctor`	Deep audit: tools, paths, portability, AI analysis (--ai
`dot edit`	Open chezmoi source in $EDITOR
`dot encrypt-check`	Check disk encryption status
`dot env`	Tool versions (mise)
`dot env`	emit Emit a portable workstation environment manifest (SBOM; --format json)
`dot env`	install Install requested tool versions via mise
`dot env`	list List managed tool versions via mise
`dot env`	prune Show or remove orphan tool installs (--yes to commit)
`dot env`	use Pin a tool version globally/locally via mise
`dot firewall`	Apply firewall hardening [macOS,Linux]
`dot fleet`	Show fleet node status, drift, and namespace (--json for machine output)
`dot fleet`	apply SSH to every host in fleet.toml and run dot sync (or a custom --cmd)
`dot fleet`	drift Check for configuration drift across managed files
`dot fleet`	enforce Show or set RBAC enforcement mode (advisory/strict) for agent profiles
`dot fleet`	events Show recent fleet events from local event log
`dot fleet`	namespace Show or set the active namespace for multi-tenant isolation
`dot fleet`	status Show this node's fleet status: id, namespace, version, OS, drift, last apply
`dot fonts`	Install (default) or patch Nerd Fonts (JetBrainsMono by default)
`dot goose`	Run the Goose CLI with dotfiles context patterns.
`dot heal`	Auto-repair common dotfiles problems (missing files, broken links).
`dot health`	Run the health dashboard with optional fixes.
`dot help`	Show this help message
`dot history`	Shell history analysis
`dot init`	Bootstrap a foreign dotfiles repo through chezmoi + dot.
`dot keys`	Keybindings (sign-check: verify git signing)
`dot keys`	sign-check Verify git commit-signing configuration and key availability
`dot kimi`	Kimi CLI with context patterns
`dot kiro`	Kiro CLI with context patterns
`dot learn`	Start the interactive tour of your new tools
`dot lint`	Lint shell scripts (--fix
`dot load-bench`	Measure time to heavy-layer readiness
`dot lock-screen`	Enforce lock screen idle settings [Linux]
`dot manual`	Open or download the dotfiles manual in HTML, PDF, EPUB, or text.
`dot mcp`	Inspect MCP policy, supply chain, and registry; serve MCP over stdio
`dot mcp`	doctor Run the MCP policy/supply-chain/config audit
`dot mcp`	registry Show the configured MCP server registry
`dot mcp`	serve Run the stdio MCP server (JSON-RPC 2.0 on stdin/stdout)
`dot metrics`	Show recent observability metrics (JSONL)
`dot mode`	Set or inspect agent operating profiles (ask/plan/apply/audit)
`dot mode`	current Show the active agent profile and its policy
`dot mode`	doctor Validate the agent-profiles.json config and default profile
`dot mode`	list List available agent operating profiles (ask/plan/apply/audit)
`dot mode`	run Run a command under a given agent profile with a checkpoint
`dot mode`	set Switch the active agent profile
`dot mode`	show Show details of a specific agent profile
`dot new`	Create a new project from a template
`dot ollama`	Ollama with context patterns
`dot opencode`	OpenCode with context patterns
`dot packages`	List installed packages and package managers
`dot patterns`	edit Edit an AI steering pattern in $EDITOR
`dot patterns`	list List AI steering patterns
`dot patterns`	view View an AI steering pattern
`dot perf`	Show performance mode and quick timing
`dot policy`	Check and enforce security policies across the environment
`dot prewarm`	Alias of cache-refresh — regenerate shell init caches.
`dot profile`	Show/switch configuration profile
`dot profile`	set Set the active configuration profile (run dot sync to apply)
`dot profile`	show Show the active configuration profile and feature flags
`dot qwen`	Run the Qwen Coder CLI with dotfiles context patterns.
`dot registry`	info Print full metadata for a registry module
`dot registry`	install Install a registry module (scaffold)
`dot registry`	list List modules in the configured module registry
`dot registry`	search Filter registry modules by keyword
`dot registry`	set-url Override the registry URL (https only; persists)
`dot registry`	url Show the active registry URL
`dot restore`	Restore from a backup or git ref.
`dot rollback`	Rollback dotfiles to a previous state
`dot sandbox`	Launch a safe sandbox preview (Docker/Podman)
`dot score`	System health and security scorecard
`dot search`	Find commands by keyword
`dot secret-audit`	Audit secret hygiene and leakage surface
`dot secrets`	Edit encrypted secrets (age)
`dot secrets`	edit Edit the encrypted secrets file (age)
`dot secrets`	get Retrieve a secret value (--raw for plaintext)
`dot secrets`	list List indexed secret keys
`dot secrets`	load Emit export lines for a secrets bucket (use with eval)
`dot secrets`	provider Show the active secrets provider
`dot secrets`	set Store a secret value under a key
`dot secrets-create`	Create an encrypted secrets file
`dot secrets-init`	Initialize age key for secrets
`dot security-score`	Assess workstation security posture.
`dot sgpt`	Shell-GPT with context patterns
`dot snapshot`	Capture baseline system snapshot
`dot ssh-cert`	Manage short-lived SSH certificates
`dot ssh-key`	Encrypt an SSH key locally with age
`dot status`	Show configuration drift (chezmoi status)
`dot sync`	Apply dotfiles (alias for apply; --pull to fetch, --check to preview)
`dot telemetry`	Disable OS telemetry [macOS,Linux]
`dot teleport`	Deploy the dotfiles environment to a remote host over SSH
`dot theme`	Switch terminal theme (dark/light)
`dot theme`	current Show the current theme info
`dot theme`	family Cycle between theme families
`dot theme`	list Show all available terminal/wallpaper themes
`dot theme`	rebuild Regenerate themes from system and custom wallpapers
`dot theme`	set Set a theme by name (interactive picker if omitted)
`dot theme`	sync Sync the dotfiles theme with system dark/light mode
`dot theme`	toggle Toggle light/dark within the current theme family
`dot tools`	Show or install nix packages
`dot tools`	docs Show the full tools markdown documentation
`dot tools`	install Enter the Nix development shell with all managed tools
`dot tune`	Apply OS tuning (opt-in) [macOS,Linux]
`dot uninstall`	Remove the managed dotfiles environment (prompts unless --force)
`dot upgrade`	Update system toolchains, plugins, and dotfiles
`dot usb-safety`	Disable automount for removable media [Linux]
`dot version`	Show version information.
`dot vibe`	Run the Vibe AI CLI with dotfiles context patterns.
`dot wallpaper`	Apply a wallpaper from your library [macOS,Linux]
`dot wallpaper`	rotate Rotate to the next wallpaper in your library
`dot wallpaper`	sync Sync wallpaper from your library
`dot zai`	Run the ZAI CLI with dotfiles context patterns.